Regulated Operon: rapE-phrE

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rapE yqcH + 2658440..2659567 response regulator aspartate phosphatase COG0457  
phrE
+ 2659557..2659691 regulator of the activity of phosphatase RapE
 

Operon evidence: Primer extension of phrE; genome analysis
Reference: Jiang M, et al. (2000), McQuade RS, et al. (2001)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComA Positive ND ND ND Jiang M, et al. (2000): RG
SigA Promoter -33:+8 2659450..2659490 GTTAGGAGGCAACCTTTTCGATTATAATGGGAAAATAGAGG McQuade RS, et al. (2001): PE RG
SigH Promoter -36:+5 2659450..2659490 GTTAGGAGGCAACCTTTTCGATTATAATGGGAAAATAGAGG McQuade RS, et al. (2001): PE RG DB
SigH Promoter -38:+4 2659485..2659526 TAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTC McQuade RS, et al. (2001): PE RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CTTTAGCCGTTTCATAACGGCTTTTTCTTATTTCTA
     >>>>>>    <<<<<<
2659725..2659740
34..49
-8.9
phrE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai