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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | rapE-phrE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| rapE | yqcH | + | 2658440..2659567 | response regulator aspartate phosphatase | COG0457 | |
| phrE | + | 2659557..2659691 | regulator of the activity of phosphatase RapE |
| Operon evidence: | Primer extension of phrE; genome analysis |
|---|---|
| Reference: | Jiang M, et al. (2000), McQuade RS, et al. (2001) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ComA | Positive | ND | ND | ND |
Jiang M, et al. (2000): RG |
| SigA | Promoter | -33:+8 | 2659450..2659490 | GTTAGGAGGCAACCTTTTCGATTATAATGGGAAAATAGAGG |
McQuade RS, et al. (2001): PE RG |
| SigH | Promoter | -36:+5 | 2659450..2659490 | GTTAGGAGGCAACCTTTTCGATTATAATGGGAAAATAGAGG |
McQuade RS, et al. (2001): PE RG DB |
| SigH | Promoter | -38:+4 | 2659485..2659526 | TAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTC |
McQuade RS, et al. (2001): PE RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CTTTAGCCGTTTCATAACGGCTTTTTCTTATTTCTA >>>>>> <<<<<< |
phrE |
|