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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | sigW-ybbM |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| sigW | ybbL | + | 194838..195401 | RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-W) | COG1595 | x0624-BAC |
| ybbM | rsiW | + | 195415..196041 |
| Operon evidence: | Northern blotting (1.2 kb transcript measured by Cao et al.; 1.3 kb transcript measured by Horsburgh et al.) |
|---|---|
| Reference: | Cao M, et al. (2002), Horsburgh MJ, et al. (2001) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | +14:+41 | 194824..194850 | GAGGTTAGATAAATATGGAAATGATGA |
Qian Q, et al. (2002): RG FT |
| SigW | Promoter | -39:+4 | 194771..194813 | AAAATTGAAACCTTTTGAAACGAAGCTCGTATACATACAGACC |
Huang X, et al. (1999): DB RG PE, in vitro transcription, RO Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAGAAGAGTAAAGCGCGTTAGCCGCTTTGCTCTTTTTTTGCGGGCTG >>>>>>>>>>> <<<<<<<<<<<< |
ybbM |
|