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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | sigX-rsiX |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| sigX | ypuM | - | 2413821..2414405 | RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-X) | COG1595 | |
| rsiX | ypuN | - | 2412779..2413885 |
| Operon evidence: | Northern blotting (1.8 kb transcript) |
|---|---|
| Reference: | Azevedo V, et al. (1993), Horsburgh MJ, et al. (2001), Genbank L09228 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -40:+4 | 2414453..2414496 | TTCCCTTCCAAATTCCAGTTACTCGTAATATAGTTGTAATGTAA |
Huang X, et al. (1997): RO PE RG Huang X & Helmann JD (1998): PE |
| SigX | Promoter | -37:+5 | 2414418..2414459 | AATGTAACTTTTCAAGCTATTCATACGACAAAAAAGTGAACG |
Huang X, et al. (1997): RO, in-vitro transcription, PE DB RG Huang X & Helmann JD (1998): SDM RG DB PE |
| YvrH | Positive | ND | ND | ND |
Serizawa M, et al. (2005): NB DB AR RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGAGCCCTTTAAGGCTCTTTTTTAGTTGCTAT >>>>> <<<<< |
rsiX |
|