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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | spo0F |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| spo0F | - | 3808573..3808947 | two-component response regulator | COG0784 | spo0F-BAC |
| Operon evidence: | lacZ transcriptional fusions |
|---|---|
| Reference: | Trach K, et al. (1988) |
| Comments: | The stem-loop proposed by Trach et al. lacks a T-stretch. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -44:+20 | 3809002..3809065 | GAAAATGCTCAGAAAATGTCGTAAAGTAGACTATTATAATTAAAGGAAATAGGAAAATCAAACA |
Trach K, et al. (1988): S1 Lewandoski M, et al. (1986): S1 |
| SigH | Promoter | -43:+9 | 3808981..3809032 | TTATAATTAAAGGAAATAGGAAAATCAAACAGAATACATACAATACTGCTTA |
Predich M, et al. (1992): PE, in-vitro transcription, dinucleotide priming Lewandoski M, et al. (1986): S1 |
| Spo0A | Positive | -84:-51 | 3809035..3809072 | CAAAAGAGAAAATGCTCAGAAAATGTCGTAAAGTAGAC |
Strauch MA, et al. (1993): DP SDM FT |
| Spo0A | Positive | +11:+53 | 3808936..3808978 | TTTGACGAAAATCATAATATTGGGGTGTAAAATGATGAATGAA |
Strauch MA, et al. (1993): DP SDM FT |
|