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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | spoIVCA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| spoIVCA | cisA | - | 2652597..2654099 | site-specific DNA recombinase | COG1961 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Sato T, et al. (1990) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigE | Promoter | -44:+6 | 2654205..2654254 | AAAATCTCCTCATTTGGACAAACAGCTGTTACATAGCATTACCCAAGGGG |
Sato T, et al. (1994): PE S1 |
| SpoIIID | Positive | -47:-12 | 2654223..2654256 | TTAAAATCTCCTCATTTGGACAAACAGCTGTTAC |
Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR |
| SpoIIID | Positive | +137:+154 | 2654057..2654074 | CGACCGAGGAACAAGCGA |
Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAGAGGGGTGTATGCACCCCCCTTTTGTAATTACAAT >>>>>> <<<<<< |
spoIVCA |
|