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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | tagAB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| tagA | + | 3680400..3681170 | COG1922 | tagA-STA | ||
| tagB | + | 3681203..3682348 | COG1887 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Mauel C, et al. (1994) |
| Comments: | Integrational plasmids showed that tagC does not belong to the proposed tabAB operon |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PhoP | Negative | -70:+16 | 3680255..3680340 | GGAAACATATTTAAATTTAATGTAAAGATAATGTTAATCCTTTGTTGAAGATTTATGTTAAAATATAAGGTAGCTTGATTTTGCTT |
Liu W, et al. (1998): DB FT |
| PhoP | Negative | +28:+57 | 3680352..3680381 | CGGTTTTTAACTATATAAATAGAATCTTAA |
Liu W, et al. (1998): DB FT |
| PhoP | Negative | +79:+115 | 3680405..3680445 | AACAGAGACTATTCACAATATTCCTTATGTTAACAGTAACT |
Liu W, et al. (1998): DB FT |
| SigA | Promoter | -42:+5 | 3680283..3680329 | TAATGTTAATCCTTTGTTGAAGATTTATGTTAAAATATAAGGTAGCT |
Mauel C, et al. (1995): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATGATGACACTTGTTCAAAACAGAACAAGTGTTCTTTTTTCTATTGAAT >>>>>>>>>>> <<<<<<<<<<< |
tagB |
|