Transcription factor: PhoP

Factor type	LuxR/UhpA
SWISS-PROT	P13792
SubtiList	BG10363
Consensus seq.	TT(A/T/C)ACA-N3 to N7-TT(A/T/C)ACA
Comment	PhoP is phosphorylated by PhoR sensor kinase. PhoP~P binds to DNA only(?) under phosphate starvation condition. A consensus core PhoP-binding region composed of four TT(A/T)ACA direct repeats each separated by 5+-2 non-conserved nucleotides was identified.
Link to	Phylogenetic profile

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
glpTQ	glpQ	SigA	Positive	`233932..233981`	`-65:-16`	GAAAGACACATAAAAGATTAATAGTTTTCCAACACGCCGTTTACATCCGT	Antelmann H, et al. (2000): NB DB 2D-PAGE Allenby NE, et al. (2005): DB AR
phoA	phoA	SigA	Positive	`1017785..1017853`	`-87:-20`	GCGTTTTTTCATTTCCTTACAAGGCTTTCATTATTGTTTACATGATCAACAGCCGCATTTAACAAAGTT	Liu W, et al. (1998): DP GS RO FT Allenby NE, et al. (2005): DB AR NB
phoB-ydhF	phoB	SigA; SigE	Positive (SigA promoter); Negative (SigE promoter)	`621075..621133`	`-65:-7 (SigA); +18:+76 (SigE)`	TCTTGTAAATCCAATCTTTAAAATCGATTAATACTAGCTTAACAGTTTAAAAATATAAT	Liu W, et al. (1997): GS FT Abdel-Fattah WR, et al. (2005): RG; in-vitro transcription assay; FT Allenby NE, et al. (2005): DB AR
phoB-ydhF	phoB	SigE	Negative (SigE promoter)	`621137..621185`	`-35:+14`	CTAAAACTTCTCATAAAAGAATAACCATTATTTAAGGGTGCCAGTTCAT	Abdel-Fattah WR, et al. (2005): RG; in-vitro transcription assay; FT
phoD	phoD	SigA	Positive	`283460..283509`	`-66:-17`	TTCAGCGCTTACAATCAGTTCACACTTCTTCACAGTCGTTTAACAATGAT	Eder S, et al (1999): PE FT Allenby NE, et al. (2005): DB AR
phoPR	phoP	SigA	Positive	`2977766..2977794`	None	TGTCATGAAAGTATTATCCTAATAAAAAG	Paul S, et al. (2004): FT RG
phoPR	phoP	SigA	Positive	`2977658..2977711`	None	ATCATAAACGTCTTTATTTCTTTTAAAAATGATGTAAAAGGCGAATTGTCGGAA	Pragai Z, et al. (2004): FT GS Paul S, et al. (2004): FT RG
phoPR	phoP	SigA	Positive	`2977600..2977639`	None	ATAAAATCATGAAACATGTTAAGATGACATAAAATAGAGA	Pragai Z, et al. (2004): FT GS
phoPR	phoP	SigA	Positive	`2977494..2977522`	None	ATTGTTACTCTTTTACAGTACAATTTGGA	Paul S, et al. (2004): FT RG
pst	pstS	SigA	Positive	`2580906..2580956`	`-66:-15`	CACTGATTTACAAAACCTTAACATTCGGTTCAAACCCTTTTTACATAGAAC	Liu W, et al. (1998): DP GS FT Qi Y, at al. (1997): PE RG Allenby NE, et al. (2005): DB AR
resABCDE	resA	SigA	Positive	`2420573..2420640`	`-72:-6`	ACGCTTTCTAAATTTCACATAACCTTCAAAAAGTAAGAAATGTGAAATGAACGTGCAATGATATAATT	Birkey SM, et al. (1998): GS FT
resABCDE	resD	SigA	Negative	`2417097..2417166`	`-45:+132`	CGACACAGTTCTCAAACTTTCTCACGATTTGATAAAATGAAAGTAACAGAAGGAAAGCAGGGGGAAAACA	Birkey SM, et al. (1998): GS FT
skf	ybcO	SigA	Positive	ND	ND	ND	Allenby NEE, et al. (2006): DB RG NB GS
tagAB	tagA	SigA	Negative	`3680255..3680340`	`-70:+16`	GGAAACATATTTAAATTTAATGTAAAGATAATGTTAATCCTTTGTTGAAGATTTATGTTAAAATATAAGGTAGCTTGATTTTGCTT	Liu W, et al. (1998): DB FT
tagAB	tagA	SigA	Negative	`3680352..3680381`	`+28:+57`	CGGTTTTTAACTATATAAATAGAATCTTAA	Liu W, et al. (1998): DB FT
tagAB	tagA	SigA	Negative	`3680405..3680445`	`+79:+115`	AACAGAGACTATTCACAATATTCCTTATGTTAACAGTAACT	Liu W, et al. (1998): DB FT
tagDEF	tagD	SigA	Negative	`3680144..3680204`	`-81:-12`	GTCTGAGTGTAATTACATATTTTGGAATGTTTTTCTCCTCATGAGTACTTAACCTTTTTTA	Liu W, et al. (1998): DB FT
tagDEF	tagD	SigA	Negative	`3679954..3680000`	`+122:+168`	ATGAAAAAAGTTATCACATATGGAACTTTTGATTTACTGCATTGGGG	Liu W, et al. (1998): DB FT
tagDEF	tagD	SigA	Negative	`3680016..3680043`	`+79:+106`	TGTTTTTAATAGTGTTTAACATTAGGAA	Liu W, et al. (1998): DB FT
tuaABCDEFGH	tuaA	SigA	Positive	`3657983..3658027`	`-62:-18`	ATTCACACTTCTTAACATACCATTTACATCCAATTAACATCCGTC	Liu W, et al. (1998): DB GS FT Soldo B, et al. (1999): PE RG Allenby NE, et al. (2005): DB AR
vpr	vpr	None	Positive	ND	ND	ND	Allenby NE, et al. (2005): DB AR NB
yfkN	yfkN	None	Positive	`858877..858903`	None	AATAGTTACAAAATATTCTTACAATAG	Allenby NE, et al. (2005): DB RG AR NB
yhbH	yhbH	SigE	Positive	ND	ND	ND	Pragai Z, et al. (2002): RG DB
yjdB	yjdB	None	Positive	`1269456..1269479`	None	ATTATTAACATTTATTTACAAGGA	Allenby NE, et al. (2005): DB AR NB
ykzB-ykoL	ykoL	SigA	Positive	`1397389..1397448`	`-72:-13`	AAAATCTTCGTAAACATAAATTCTTTACATTAGATTCATACCACGTTCATTTAAAAAGAG	Robichon D, et al. (2000): RG PE Pragai Z, et al. (2004): FT GS Abdel-Fattah WR, et al. (2005): RO
yttP	yttP	None	Positive	ND	ND	ND	Pragai Z, et al. (2002): DB
yurI	yurI	None	Positive	ND	ND	ND	Allenby NE, et al. (2005): DB AR RG NB