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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | wapA-yxxG |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| wapA | - | 4022562..4029566 | cell wall-associated protein precursor (CWBP200, 105, 62) | COG3209 | ||
| yxxG | - | 4022072..4022500 |
| Operon evidence: | Northern blotting (8.0 kb transcript) |
|---|---|
| Reference: | Yoshida K, et al. (2000), Serizawa M, et al. (2005) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| DegU | Negative | -42:-19 | 4029620..4029643 | AAAAATATTGTAATGATATTTCAG |
Dartois V, et al. (1998): DB RG DP PE SDM |
| DegU | Negative | +5:+21 | 4029581..4029597 | ATATTACTTTTATTACA |
Dartois V, et al. (1998): DB RG DP PE SDM |
| SigA | Promoter | -40:+4 | 4029598..4029641 | AAATATTGTAATGATATTTCAGTCTAGTTAAGATTATTGAGTAA |
Dartois V, et al. (1998): PE RG |
| YvrH | Positive | ND | ND | ND |
Serizawa M, et al. (2005): NB DB AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATAAAGCTTGTATCGATAAGCGATACAAGCTTTTTTAGAACAAAT >>>>>>>>>> <<<<<<<<<< |
yxxG |
|