Regulated Operon: xsa

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
xsa
- 2912729..2914216 alpha-L-arabinosidase COG3534  

Operon evidence: Northern blotting (1.6 kb transcript)
Reference: Scharf C, et al. (1998), Raposo MP, et al. (2004)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AraR Negative -77:-46 2914361..2914392 TATAAATACATACGTACAAATATAAAAACAAT Raposo MP, et al. (2004): RG PE FT
AraR Negative -38:-7 2914322..2914353 GTCGTTGACATGTACGAACATATATAATATGG Raposo MP, et al. (2004): RG PE FT
SigA Promoter -38:+9 2914307..2914353 GTCGTTGACATGTACGAACATATATAATATGGTTACTTTAAAAGCGC Raposo MP, et al. (2004): RG PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CGCAAGAGCGCCGGAGCTTCATGCCGGCGCTCTTTTTCAGGTTTTAA
     >>>>>>>>>         <<<<<<<<<
2912694..2912720
9..35
-20.7
xsa

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai