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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | xsa |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| xsa | - | 2912729..2914216 | alpha-L-arabinosidase | COG3534 |
| Operon evidence: | Northern blotting (1.6 kb transcript) |
|---|---|
| Reference: | Scharf C, et al. (1998), Raposo MP, et al. (2004) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AraR | Negative | -77:-46 | 2914361..2914392 | TATAAATACATACGTACAAATATAAAAACAAT |
Raposo MP, et al. (2004): RG PE FT |
| AraR | Negative | -38:-7 | 2914322..2914353 | GTCGTTGACATGTACGAACATATATAATATGG |
Raposo MP, et al. (2004): RG PE FT |
| SigA | Promoter | -38:+9 | 2914307..2914353 | GTCGTTGACATGTACGAACATATATAATATGGTTACTTTAAAAGCGC |
Raposo MP, et al. (2004): RG PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CGCAAGAGCGCCGGAGCTTCATGCCGGCGCTCTTTTTCAGGTTTTAA >>>>>>>>> <<<<<<<<< |
xsa |
|