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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | xylAB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| xylA | + | 1891116..1892453 | xylose isomerase | COG2115 | xylA-BAC | |
| xylB | yncA | + | 1892604..1894103 | xylulose kinase | COG1070 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Jacob S, et al. (1991) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CcpA | Negative | +132:+161 | 1891143..1891172 | AACTATTTTGGAAGCGCAAACAAAGTGGTT |
Gartner D, et al. (1988): RG Jacob S, et al. (1991): RG DP Kraus A, et al. (1994): SDM DP RG Chauvaux S, et al. (1998): DB RG Kim JH, et al. (2005): PE FT |
| CcpB | Negative | ND | ND | ND |
Gartner D, et al. (1988): RG Chauvaux S, et al. (1998): DB RG |
| SigA | Promoter | -44:+18 | 1890968..1891029 | CTAAAAAAAATATTGAAAATACTGACGAGGTTATATAAGATGAAAATAAGTTAGTTTGTTTA |
Hastrup S (1988): Genetics and biotechnology of Bacilli, vol.2 p.79-83: S1 Gartner D, et al. (1988): S1 |
| XylR | Negative | -5:+35 | 1891010..1891049 | AAAATAAGTTAGTTTGTTTAAACAACAAACTAATAGGTGA |
Hastrup S (1988): Genetics and Biotechnology of Bacilli, Vol. 2, pp. 79-83: HM Gartner D, et al. (1988): RG HM Kreuzer P, et al. (1989): DP RG DB Gartner D, et al. (1992): SDM GS FT RG Dahl MK, et al. (1994): GS FT SDM Dahl MK, et al. (1994): GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAATAACCCCTCACATTGACGTGAAGGGGTGTTTTTTATTGTTACT >>>>>>>>> <<<<<<<<<< |
xylB |
|