Regulated Operon: ybgJ-ybgH

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ybgJ glsA - 264181..265164
COG2066  
ybgH glnT - 262720..264111
COG1115  

Operon evidence: Northern blotting (2.5 kb transcript)
Reference: Satomura T, et al. (2005)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YcbA Positive -56:-13 265272..265315 CAAAATGTTTTTGTCGTATTTTGTATGATTCTGTAGTCTCCATT Satomura T, et al. (2005): GS FT
SigA Promoter -55:+20 265240..265314 AAAATGTTTTTGTCGTATTTTGTATGATTCTGTAGTCTCCATTATACAGTAATTATACCTTCCGCTATTATGAAA Satomura T, et al. (2005): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CATAAGAAAAGGGTGTTCAGACATATGGGCTGAACACCTTTCTCTTTTTGCGT
           >>>>>>>>>         <<<<<<<<<
262687..262713
7..33
-15.5
 ybgH

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai