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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yceCDEFGH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yceC | + | 311711..312310 | COG2310 | |||
| yceD | + | 312332..312913 | COG2310 | yceD-BAC-2 | ||
| yceE | + | 312948..313526 | COG2310 | yceD-BAC-1 yceD-BAC-2 | ||
| yceF | + | 313577..314350 | COG0861 | yceF-BAC | ||
| yceG | + | 314435..316048 | ||||
| yceH | + | 316064..317155 | COG3853 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Cao M, et al. (2002) |
| Comments: | Northern blotting results in BSORF show various transcripts in this region. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -45:+2 | 311574..311620 | TCGTCAATTATTCTTAACTTTTACGAAACTTTGATATAATAACAAAC |
Cao M, et al. (2002): PE |
| SigW | Promoter | -40:+3 | 311592..311634 | TTTTACGAAACTTTGATATAATAACAAACGTATATATTAGTAA |
Cao M, et al. (2002): ROMA AR RG RO PE Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAAAAACCCCGCTTGTGGAACATAAGCGGGGTATTTCAATTACATCAT >>>>>>>>>>>> <<<<<<<<<<<< |
yceH |
|