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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yciABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yciA | + | 363815..364732 | COG1469 | |||
| yciB | + | 364729..365313 | COG1376 | |||
| yciC | + | 365622..366815 | COG0523 | x0659-BAC |
| Operon evidence: | downstream genes are on the opposite strand |
|---|---|
| Reference: | Gaballa A & Helmann JD (1998) |
| Comments: | Internal promoter in front of yciC. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -40:+25 | 363737..363801 | TTTCTCTTGATTTTCAACAGTGAACCGATCAAAATAAATAGTAATTATTACGATTTGTTAGTGAG |
Gaballa A, et al. (2002): PE |
| Zur | Negative | -10:+17 | 363767..363794 | AAAATAAATAGTAATTATTACGATTTGT |
Gaballa A, et al. (2002): GS FT |
| SigA | Promoter | -43:+29 | 365318..365389 | AAAACCGTTGACAAAAAGGAAAAAAGACCATACAATTTAAGTCGTAACAATTACGTTTTATGATAAATGGCT |
Gaballa A, et al. (2002): PE |
| Zur | Negative | +23:+42 | 365583..365602 | TTTAAATCGTAATCATTCTA |
Gaballa A & Helmann JD (1998): DB RG GS HM FT Gaballa A, et al. (2002): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCCGTCCCATGGGGAACGGCTTTTTTTAATGAAAC >>>>>>>> <<<<<<<<< |
yciC |
|