Regulated Operon: ycsFGI-kipIAR-ycsK

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ycsF
+ 456576..457349

 
ycsG ycsH + 457364..458578

 
ycsI
+ 458584..459375

 
kipI ycsJ + 459419..460141

 
kipA
+ 460144..461157

 
kipR ycsO + 461173..461913 transcriptional regulator (IclR family) COG1414  
ycsK
+ 461988..462629
COG2755  

Operon evidence: Genome analysis
Reference: Wang L, et al. (1997)
Comments: Northern blotting results in BSORF show a monocistronic ycsF transcript (0.65 kb), a ycsGI-kipIAR transcript (4.5 kb), and a monocistronic ycsK transcript (0.65 kb).


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
KipR Negative ND ND ND Wang L, et al. (1997): DB
TnrA Positive ND ND ND Wang L, et al. (1997): DB
SigK Promoter ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GAAAACGCGCCTCATGACAGGCGCGTTTTTTATGTGTGAT
     >>>>>>>      <<<<<<<
462634..462653
5..24
-14.1
ycsK

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai