Regulated Operon: ydjK

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ydjK iolT + 675990..677411
COG0477  

Operon evidence: Northern blotting (1.7 kb transcript)
Reference: Yoshida K, et al. (2002), Genbank AB007638
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
IolR Negative -2:+87 675700..675788 TCAGATATAACAAAAATGTCACTATAACATCACTACAATTGAACTATTAAGTGACTAATAAATACCAAATGAACGAGGTTATGCACAAA Yoshida K, et al. (2002): NB PE FT
SigA Promoter -41:+5 675661..675706 TTTATATTGACTGAAAGCGTTTTTATAATTATGATAATATCAGATA Yoshida K, et al. (2002): NB PE FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAGAATCCGCACCCGAGTGCGGATTCTTTTTGGTTTCA
     >>>>>>>    <<<<<<<
677424..677441
13..30
-13.4
 ydjK

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai