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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yfkJIH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yfkJ | + | 861340..861810 | COG0394 | yfkJ-BAC | ||
| yfkI | + | 861828..862148 | ||||
| yfkH | + | 862172..862999 | COG1295 |
| Operon evidence: | Northern blotting |
|---|---|
| Reference: | BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -44:+8 | 861245..861296 | GACATCAGTTGAAAAGAAAATGAACATCCTACTAAGATATTCATGAAGGTTT |
Price CW, et al. (2001): RACE-PCR |
| SigB | Promoter | -44:+9 | 861284..861336 | TTCATGAAGGTTTCTTTTTAGAGAAATAGGGGCAAAGAATAGGGAGGTTGCAC |
Price CW, et al. (2001): RACE-PCR DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAAAAGCCTCCTGACATGATGTCGGGAGGCTTTTTGATTAAGAAG >>>>>>>>>>> <<<<<<<<<<< |
yfkH |
|