Regulated Operon: yfnHGFED

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yfnH
+ 797806..798570
COG1208  
yfnG
+ 798640..799545
COG0451  
yfnF
+ 799569..800480

 
yfnE
+ 800509..801687
COG0463  
yfnD
+ 801688..802623

 

Operon evidence: Northern blotting
Reference: BSORF, Genbank D86418
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigK Promoter -39:+6 797658..797702 TTGGTCACCAAGGCTGGCTTTCTCTCATATCATTACAGTAGATTT Eichenberger P, et al. (2004): Race-PCR
SigE Promoter -37:+6 800509..800551 GTGAAAGCAAGCGTTATTATTCCTGCATATAATTCGAAGGAGC Eichenberger P, et al. (2004): Race-PCR
SigK Promoter -37:+6 800509..800551 GTGAAAGCAAGCGTTATTATTCCTGCATATAATTCGAAGGAGC Eichenberger P, et al. (2004): Race-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAACCCCCTGCCGCCTGGCAGGGGTTTTTTCAGCTATGC
     >>>>>>>>    <<<<<<<<
802629..802648
6..25
-18.6
 yfnD

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai