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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yhaG |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yhaG | trpP | - | 1073951..1074469 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Sarsero JP, et al. (2000) |
| Comments: | Binding of the mtrB product (TRAP) causes translational attenuation of yhaG. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -42:+19 | 1074533..1074593 | AAAGTCTGGCTATGCAAACCGTCCGTTTGGTATACTGTTTGCATAACACATTCTGTAAAGC |
Sarsero JP, et al. (2000): PE |
| MtrB | Negative | ND | 1074448..1074522 | AATGATGAGCATATTATTGGAGGGCAAAAAGCTTAGCAGAGGAGAGCATAGTTATGAAAACAAAAGAGTTAGTCA |
Sarsero JP, et al. (2000): DB RG, RNA dot blot analysis Yakhnin H, et al. (2004): RG DB GS FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAACCTCTTCCGCTTCCGGGAGAGGTTTTTTTGAACAGAG >>>>>>>>> <<<<<<<<< |
yhaG |
|