 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yknWXYZ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yknW | + | 1502889..1503584 | ||||
| yknX | + | 1503589..1504722 | COG0845 | |||
| yknY | + | 1504723..1505415 | COG1136 | |||
| yknZ | + | 1505412..1506605 | COG0577 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Huang X, et al. (1999), Genbank AF012285 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | -60:-15 | 1502803..1502848 | GGTTTTTGGAAATTTATTAGAAAAACATGAAACTTTTTGATATCCT |
Qian Q, et al. (2002): RG FT |
| SigW | Promoter | -39:+4 | 1502825..1502867 | AAACATGAAACTTTTTGATATCCTTCCCGTACTATTTGTTAGA |
Huang X, et al. (1999): S1 Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGTAGCCTCATGCAACATGCATGAGGTTTTTTTATGTTTAG >>>>>>>>> <<<<<<<<< |
yknZ |
|