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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yneAB-ynzC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yneA | + | 1917615..1917932 | COG1388 | |||
| yneB | + | 1917951..1918604 | COG1961 | yneB-BAC | ||
| ynzC | + | 1918668..1918901 | COG4224 | x1580-BAC ynzC-BAC |
| Operon evidence: | Northern blotting (1.3 kb transcript) |
|---|---|
| Reference: | Kawai Y, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ComK | Positive | ND | ND | ND |
Ogura M, et al. (2002): AR RG DB |
| LexA | Negative | ND | 1917519..1917542 | CAGTACAAACATAGGTTCGAAAAA |
Kawai Y, et al. (2003): NB Au N, et al. (2005): GS AR DB |
| LexA | Negative | ND | 1917548..1917571 | TGACAGAAACGTTTGTTCGTATAT |
Kawai Y, et al. (2003): NB Au N, et al. (2005): GS AR DB |
| LexA | Negative | ND | 1917585..1917608 | AAATGCGAACAAACATTCCTGTTG |
Kawai Y, et al. (2003): NB Au N, et al. (2005): GS AR DB |
| ComK | Positive | ND | 1917796..1917818 | TAAACAAAAATGATTTTATTGAA |
Ogura M, et al. (2002): AR RG HM DB |
| ComK | Positive | ND | 1917827..1917849 | TGATAAAAATCAACTTCAAACCT |
Ogura M, et al. (2002): AR RG HM DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TATAAGAGGAATACGGCAATATCGTATTCCTCTTTTGCATATACTAT >>>>>>>>>>> <<<<<<<<<<< |
ynzC |
|