Regulated Operon: ypjB

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ypjB
- 2360740..2361534

 

Operon evidence: downstream gene in in the opposite direction
Reference: Sorokin A, et al. (1996)
Comments: Genbank L47709


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -39:+8 2361549..2361595 GTTGGTCTATCCTTGTCCCTTTCTTCATATTCTGTAAGGAGAGAGAG Eichenberger P, et al. (2003): AR, 5'-RACE-PCR
SpoIIID Negative ND ND ND Eichenberger P, et al. (2004): GS AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TGAGGGGCGGCGGTCAGCCGCCTTTTTTCTATTACAT
     >>>>>>     <<<<<<
2360715..2360731
9..25
-14.7
ypjB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai