Regulated Operon: yrhH

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yrhH
- 2777104..2777646
COG0500  

Operon evidence: Genome analysis
Reference: Huang X & Helmann JD (1998), Huang X, et al. (1998)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigW Promoter -39:+6 2777728..2777772 TCTATTGAAACATTTTTCAATACATTGCCGTCTAGTTGGTACCTT Huang X & Helmann JD (1998): DB RG
Huang X, et al. (1998): RO
Cao M, et al. (2002): AR
SigX Promoter -39:+6 2777728..2777772 TCTATTGAAACATTTTTCAATACATTGCCGTCTAGTTGGTACCTT Huang X & Helmann JD (1998): RO
Huang X, et al. (1998): RO
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GGAAATATATCCAAGATCCTCGTATTAGGATTTGGGTATATTTTCTTAATTTTTT
     >>>>>>>>>>>>>>>      <<<<<<<<<<<<<<
2777053..2777087
17..51
-15.7
yrhH

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai