Regulated Operon: yuxH

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yuxH comB, yufA - 3257081..3258310
COG3434  

Operon evidence: S1 nuclease mapping
Reference: Guillen N, et al. (1989), Weinrauch Y, et al. (1989)
Comments: The 3' ends of the yuxH and the converging yuzC coding regions overlap. The terminator that was found experimentally for yuxH is downstream of yuzC, upstream of degQ. The low-resolution S1 nuclease mapping estimated the termination signal to be about 30 base pairs downstream of the indicated stem-loop.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -49:+17 3258327..3258392 TTTTCATGTTTAGACAATTTTCGTCAAATTATTTGATATACTTAGGGGTGAAAGCCGCGCGTATTG Weinrauch Y, et al. (1989): PE
Spo0A Negative -49:+17 3258327..3258392 TTTTCATGTTTAGACAATTTTCGTCAAATTATTTGATATACTTAGGGGTGAAAGCCGCGCGTATTG Fujita M, et al. (2005): RG
Molle V, et al. (2005): ChIP-on-chip, AR GS

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GAAAAGGCCACAACTTTAGCGTTGCGGTCTTTTTCGGTGTTTGT
     >>>>>>>>>      <<<<<<<<<
3256642..3256665
416..439
-9.6
yuxH

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai