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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yuxH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yuxH | comB, yufA | - | 3257081..3258310 | COG3434 |
| Operon evidence: | S1 nuclease mapping |
|---|---|
| Reference: | Guillen N, et al. (1989), Weinrauch Y, et al. (1989) |
| Comments: | The 3' ends of the yuxH and the converging yuzC coding regions overlap. The terminator that was found experimentally for yuxH is downstream of yuzC, upstream of degQ. The low-resolution S1 nuclease mapping estimated the termination signal to be about 30 base pairs downstream of the indicated stem-loop. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -49:+17 | 3258327..3258392 | TTTTCATGTTTAGACAATTTTCGTCAAATTATTTGATATACTTAGGGGTGAAAGCCGCGCGTATTG |
Weinrauch Y, et al. (1989): PE |
| Spo0A | Negative | -49:+17 | 3258327..3258392 | TTTTCATGTTTAGACAATTTTCGTCAAATTATTTGATATACTTAGGGGTGAAAGCCGCGCGTATTG |
Fujita M, et al. (2005): RG Molle V, et al. (2005): ChIP-on-chip, AR GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAAAGGCCACAACTTTAGCGTTGCGGTCTTTTTCGGTGTTTGT >>>>>>>>> <<<<<<<<< |
yuxH |
|