Regulated Operon: yxjC-scoAB-yxjF

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yxjC
- 4001734..4003152

 
scoA yxjD - 4000994..4001710 succinyl CoA:3-oxoacid CoA-transferase (subunit A) COG1788  
scoB yxjE - 4000347..4000997 succinyl CoA:3-oxoacid CoA-transferase (subunit B) COG2057  
yxjF
- 3999557..4000330
COG1028  

Operon evidence: Northern blotting (3.8 kb transcript)
Reference: Eichenberger P, et al. (2003), Yoshida K, et al. (2000), BSORF
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CcpA Negative +32:+54 4003174..4003196 TTTTTGTAAACGCTTTCTAGTTC Miwa Y, et al. (2000): RG
SigE Promoter -36:+6 4003222..4003263 ATCGGAATAGTTGGCCCACGCTTCTCGTACATATGGAAAGGG Eichenberger P, et al. (2003): AR, 5'-RACE-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAACACACTTGCTCCGCTAGGGAATCAAGTGTGTTTTTTTCTTTGCTT
     >>>>>>>>>>>>     <<<<<<<<<<<<<
3999518..3999547
10..39
-15.9
 yxjF

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai