Regulated Operon: yxjJI

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yxjJ
+ 3995848..3996111

 
yxjI
+ 3996240..3996728
COG4894  

Operon evidence: Genome analysis
Reference: Dartois V, et al. (1998), Yoshida K, et al. (2000)
Comments: Northern blotting experiments by Yoshida et al. show various transcripts of different lengths, some long enough to cover a yxjIJ operon. Internal promoter in front of yxjI.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
DegU Negative ND ND ND Dartois V, et al. (1998): Unpublished data
SigW Promoter -40:+3 3996173..3996215 GAGCCTGAAACCTTTTCGCCACCTATCCGTAATTTCATACAAG Huang X, et al. (1999): S1
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TTCAAGCTCTTCCTTACACAAAGGAAGAGCTTTTTACATGCTTAA
     >>>>>>>>>>     <<<<<<<<<<
3996919..3996943
191..215
-17.7
yxjI

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai