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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | degSU |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| degS | sacU | - | 3645379..3646536 | COG4585T | ||
| degU | iep | - | 3644607..3645296 | COG2197TK |
| Operon evidence: | lacZ fusions; Northern blotting (0.7-0.8 kb degU transcript originating from the degU-specific promoters) |
|---|---|
| Reference: | Msadek T, et al. (1990), Soldo B, et al. (1996), Yasumura A, et al. (2008), Genbank U56901 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -52:+15 | 3646643..3646709 | ATTCGTACAGTCTTTAGAATTTTTGTGCGTATTTTGGTATCATAAAGAGTAGATAGTATATAAAAAT |
Msadek T, et al. (1990): PE |
| SigA | Promoter | -44:+7 | 3645392..3645442 | GACAATAGATTCGAAAATAGGTCTTGGGACATTTATTATGATTAAGGTTCC |
Yasumura A, et al. (2008): PE |
| SigA | Promoter | -45:+5 | 3645307..3645356 | AAAAGGCATATTGACCGAATGCTAGAGTATATAGAACAATAATACAAGGA |
Yasumura A, et al. (2008): PE |
| TnrA | Negative | -57..-41 | 3645439..3645455 | TGGAAGGAACGATGACA |
Yasumura A, et al. (2008): RG NB DP DB SDM |
| DegU | Positive | -72:+7 | 3645305..3645385 | TCTTTGACTATGATTTGTAAAATAGAGCCAAAAGGCATATTGACCGAATGCTAGAGTATATAGAACAATAATACAAGGAGG |
Yasumura A, et al. (2008): RG NB DP DB OV Ogura M, (2010): FT GS SDM Kobayashi K, et al. (2010): AR HB DB GS |
| DegU | Positive | -106:-75 | 3645386..3645417 | GGGACATTTATTATGATTAAGGTTCCGTTATC |
Ogura M, et al (2010): FT GS SDM Kobayashi K, et al. (2010): AR HB DB GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAGGAGACTTGCCTTTTACTAGGCAGGTCTTTTTTTAGGCTGCC >>>>>>>>> <<<<<<<<< |
degU |
|