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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | dltABCDE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| dltA | dae | + | 3952275..3953786 | COG1020Q | dltA-BAC dltA-STA | |
| dltB | ipa-4r | + | 3953783..3954970 | COG1696M | ||
| dltC | ipa-3r | + | 3954987..3955223 | COG0236IQ | dltC-BAC dltC-LAB dltC-STA dltC-STR | |
| dltD | ipa-2r | + | 3955223..3956401 | COG3966M | x0213-BAC | |
| dltE | ipa-1r | + | 3956492..3957250 | COG3967M |
| Operon evidence: | Northern blotting (5.0 kb transcript) |
|---|---|
| Reference: | Perego M, et al. (1995), Serizawa M, et al. (2005) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigD | Promoter | ND | 3951975..3952022 | ATAAAGATTCATTTTCAAAAACATACGCCGATATATTAATTTGAGGGA |
Perego M, et al. (1995): DB RG |
| SigX | Promoter | -38:+12 | 3952033..3952082 | AAAATGAAACTTTTTGAGCATCTGATCGTCAAATAATCATGTGATTGTCG |
Cao M & Helmann JD (2004): ROMA RG PE |
| Spo0A | Positive | +1:+21 | 3952071..3952091 | ATGTGATTGTCGAAAAAACGG |
Perego M, et al. (1995): DB FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AACACGCAGGAGAATTAATTTCTCCTGCTTTTTTCATATGAAT >>>>>>>>> <<<<<<<<< |
dltE |
|