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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ispA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ispA | - | 2525789..2526679 | COG0142H |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| DegU | Positive | ND | ND | ND |
Ruppen ME, et al. (1988): DB RG, protease activity |
| Hpr | Negative | ND | ND | ND |
Ruppen ME, et al. (1988): DB RG |
| Ipi | Positive | ND | ND | ND |
Shiga Y, et al. (1993): DB RG |
| SigA | Promoter | -47:+10 | 1387019..1387075 | CAAATGGCTCTGTCCGAGCGCTTGCTTTTTTCATATAATATGAGGCAACACCCTTGA |
Koide Y, et al. (1986): S1 |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTACGTAGAAAAGCCTCTTTCTCTCATGGGAAAGAGGCTTTTTGTTGTGAGAA >>>>>>>>>>> <<<<<<<<<<< |
ispA |
|