Regulated Operon: lytE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
lytE cwlF + 1018998..1020002
COG0791M  

Operon evidence: transcriptional fusion; Northern blotting (1.1 kb transcript)
Reference: Ishikawa S, et al. (1998), Genbank Y14082
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigH Promoter -35:+9 1018951..1018994 AAAAAAAGAGATACATATATATAGAGTTAACATTTGGGGAGGAA Ishikawa S, et al. (1998): PE
SigA Promoter 50:+10 1018886..1018945 ACATGAAGTCAAGACTATTTCTGATGGGAATCTATCCTTATAATAGAAATCAATAAGATT Ishikawa S, et al. (1998): PE
Spo0A Negative ND ND ND Molle V, et al. (2003): GS CH
YycF Positive -57:-34 1018879..1018900 ATTTGTCACATGAAGTCAAGAC Bisicchia P, et al. (2007): AR RG GS HM

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GAAAACCCGTTCATTGGAACGGGTTTTTTTCATTAGAC
     >>>>>>>    <<<<<<<
1020016..1020033
14..31
-13.3
lytE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai