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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | mhqNOP |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ydfN | mhqN | + | 596478..597098 | COG0778C | ||
| ydfO | mhqO | + | 597114..598052 | COG0346E | ||
| ydfP | mhqP | + | 598154..598543 | COG2259S |
| Operon evidence: | Northern blotting (2.3 kb transcript) |
|---|---|
| Reference: | Towe S, et al. (2007), Nguyen VD, et al. (2007) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+10 | 596270..596329 | AATTTTCAAAAACCTATTGACATGAGAAGATCTGTATTTTACTATTATCTCATATTCAAG |
Towe S, et al. (2007): PE |
| YkvE | Negative | -15:+160 | 596305..596479 | ATTTTACTATTATCTCATATTCAAGATATTTTAATTTGAGATATTTGGTCGGAAAGATCAGCGATCAAGCGCAACTCTAAGTGTTCAATCGTTGTCAGTTCTTTTACACAATATTCAATATGATTTTTTATAACATAATATCTCGAATTCGAGATAAAAGGGAGTGTAGCGTAAT |
Towe S, et al. (2007): AR 2D-gel GS FT |
| SigB | Promoter | -45:+5 | 596815..596864 | AAGACACCGTTTCGTTTTATGAAAACAGGGGAGAACAATTTAAGAGAGAT |
Price CW, et al. (2001): RACE-PCR DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CGAAAGTATGTAAGAACAGTTGCTGCTTGTCAGTAACTGTTCTTTTATTTTCACATT >>>>>>>>>>>> <<<<<<<<<<<< |
ydfP |
|