Regulated operon: recA

Regulated Operon:

recA

Genes

Genes	Synonyms	Direction	Genome position	Function	COG ID	Conserved groups
recA	recE	+	1764645..1765691		COG0468L	recA-BAC recA-STA recA-STR

Operon evidence:	Northern blotting (1.2 kb transcript)
Reference:	Cheo DL, et al. (1993)
Comments:

Promoters

Binding factor	Regulation	Location	Absolute position	Binding seq.(cis-element)	Experimental evidence
ComK	Positive	`-150:-130`	1764463..1764483	`GCAAAAATAATATTTTCAGCA`	Hamoen LW, et al. (2001): FT GS Haijema BJ, et al. (1996): FT GS RG DB DP Cheo DL, et al. (1992): DP RG
ComK	Positive	`-120:-95`	1764493..1764518	`CCTAAGAAAACATGATTTCTCTGATA`	Hamoen LW, et al. (2001): FT GS Haijema BJ, et al. (1996): FT GS RG DB DP Cheo DL, et al. (1992): DP RG
ComK	Positive	`-95:-75`	1764518..1764538	`ACATTATGATATTTTGATAGG`	Hamoen LW, et al. (2001): FT GS Haijema BJ, et al. (1996): FT GS RG DB DP Cheo DL, et al. (1992): DP RG
ComK	Positive	`-65:-35`	1764550..1764570	`GAAAAAATCCGAATATGCGTT`	Hamoen LW, et al. (2001): FT GS Haijema BJ, et al. (1996): FT GS RG DB DP Cheo DL, et al. (1992): DP RG
LexA	Negative	`-60:-37`	1764554..1764577	`AAATCCGAATATGCGTTCGCTTTT`	Raymond-Denise A & Guillen N (1992): DB RG Lovett CM Jr, et al (1993): GS, promoter mutations Haijema BJ, et al. (1996): DB GS DP, Western blot Miller MC, et al. (1996): GS, in-vitro transcription Winterling KW, et al. (1997): GS RG, promoter mutations Winterling KW, et al. (1998): GS FT RG, promoter mutation Hamoen LW, et al. (2001): GS Au N, et al. (2005): GS AR DB Groban ES, et al. (2005): GS, promoter mutations
SigA	Promoter	`-45:+20`	1764569..1764633	`TTCGCTTTTTTCTTGGCAAATCCCTTCAAACAGGGTATAGTATATGTAGTGGTAACATAAAGGAG`	Cheo DL, et al. (1993): S1

Terminator

Terminator sequence	Absolute position	Position from stop codon	Free energy [kcal/mol]	Downstream of
`AAAAGGCTGAGTGAAAAACTCAGCTTTTTTGTATTTTGC >>>>>>> <<<<<<<`	1765722..1765740	31..49	-12.8	recA

Overview

Upper Region

Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai