Regulated Operon: rnc-smc-ftsY

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
rnc rncS + 1665710..1666459
COG0571K rnc-BAC rnc-STA rnc-STR rnc-BAC rnc-STR  
smc ylqA + 1666560..1670120
COG1196D x1416-OYP  
ftsY srb + 1670140..1671129
COG0552U ftsY-BAC  

Operon evidence: Northern blotting (5.5 kb transcript)
Reference: Oguro A, et al. (1995), Kakeshita H, et al. (2000)
Comments: Internal promoter, 705 bp upstream from the ftsY translation start site, inside the smc gene, leading to a 1.7 kb monocistronic ftsY transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter ND ND ND Kakeshita H, et al. (2000): NB
GerE Positive -83:-62 1669339..1669370 AAGAAGTCAAACTTGGACGAATGGAAGTCGAG Kakeshita H, et al. (2000): PE NB
GerE Positive -143:-111 1669289..1669320 GAAAGAAATGAAACGCCTGTATAAACAAAAAA Kakeshita H, et al. (2000): PE NB
SigK Promoter -50:+5 1669382..1669436 ACTCCAATACTTACGGGAGGAATACAGCTTGTCCTTTGAGGGGGCAAAAGAGAAA Kakeshita H, et al. (2000): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGGCCCCAACATCTTGGGGCCTTTTTCTTTTTTATC
     >>>>>>>>    <<<<<<<<
1671136..1671155
7..26
-16.4
ftsY

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai