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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | rnc-smc-ftsY |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| rnc | rncS | + | 1665710..1666459 | COG0571K | rnc-BAC rnc-STA rnc-STR rnc-BAC rnc-STR | |
| smc | ylqA | + | 1666560..1670120 | COG1196D | x1416-OYP | |
| ftsY | srb | + | 1670140..1671129 | COG0552U | ftsY-BAC |
| Operon evidence: | Northern blotting (5.5 kb transcript) |
|---|---|
| Reference: | Oguro A, et al. (1995), Kakeshita H, et al. (2000) |
| Comments: | Internal promoter, 705 bp upstream from the ftsY translation start site, inside the smc gene, leading to a 1.7 kb monocistronic ftsY transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | ND | ND | ND |
Kakeshita H, et al. (2000): NB |
| GerE | Positive | -83:-62 | 1669339..1669370 | AAGAAGTCAAACTTGGACGAATGGAAGTCGAG |
Kakeshita H, et al. (2000): PE NB |
| GerE | Positive | -143:-111 | 1669289..1669320 | GAAAGAAATGAAACGCCTGTATAAACAAAAAA |
Kakeshita H, et al. (2000): PE NB |
| SigK | Promoter | -50:+5 | 1669382..1669436 | ACTCCAATACTTACGGGAGGAATACAGCTTGTCCTTTGAGGGGGCAAAAGAGAAA |
Kakeshita H, et al. (2000): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGGCCCCAACATCTTGGGGCCTTTTTCTTTTTTATC >>>>>>>> <<<<<<<< |
ftsY |
|