Regulated Operon: yqxM-sipW-tasA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yqxM yqhD - 2554486..2555247

 
sipW yqhE - 2553930..2554502
COG0681U x0624-BAC  
tasA yqhF - 2553081..2553866

 

Operon evidence: lacZ transcriptional fusions; Northern blotting (2.5 kb transcript); upstream and downstream genes are on the opposite strand
Reference: Yoshida K, et al. (2003), Stover AG & Driks A (1999)
Comments: internal promoters may exist.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -42:+4 2555304..2555349 GGTGTTTTTAAATCTATAAATCGTTGATTATACTCTATTTGTGAAG Chu F, et al. (2006): PE
SinR Negative -80:-52 2555359..2555387 TGAAAACATTCTTTTAAACGAACAAAATG Chu F, et al. (2006): RG GS FT
SinR Negative -4:+27 2555281..2555311 TTGTGAAGTTCTTTAAAGAGAACGATTGTCA Chu F, et al. (2006): RG GS FT
Spo0A Positive ND ND ND Stover AG & Driks A (1999): Western blot
Stover AG & Driks A (1999): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CAAAAGAGGAGTTAGTGCCTCTGCTCAGGCACTACTCCTCTTTTTGGGATTTTCT
     >>>>>>>>>>>>>>>      <<<<<<<<<<<<<<
2552980..2553014
67..101
-24.6
 tasA

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai