Regulated Operon: cotVWX

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
cotV
- 1251631..1252017

 
cotW
- 1251273..1251590

 
cotX
- 1250656..1251174

 

Operon evidence: Northern blotting (1.6 kb transcript)
Reference: Zhang J, et al. (1994), Zhang J, et al. (1993)
Comments: The internal promoter in front of cotX leads to a 0.6 kb transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GerE Positive -53:-32 1252073..1252094 AAATTGGTTATTTTTATTATTC Zhang J, et al. (1994): FT RO
SigK Promoter -42:+6 1252036..1252083 TTTTATTATTCCGCTCTGCACCCCATTTGCATTATATAGAGTATGGAT Zhang J, et al. (1994): NB PE DB RO
GerE Positive -70:-50 1251245..1251265 TAAAAAATAGGGTTCTTCATC Zhang J, et al. (1994): FT RO
GerE Positive -50:-32 1251227..1251245 CAGGATATATGACTCAGTC Zhang J, et al. (1994): FT RO
SigK Promoter -43:+5 1251191..1251238 TATGACTCAGTCAAAATAAGAGGCTCGCTCATTTAATAACAGTAAAAG Zhang J, et al. (1994): NB PE DB RO
SpoIIID Negative -35:-7 1251201..1251230 AGTCAAAATAAGAGGCTCGCTCATTTAATA Ichikawa H, et al. (2000): GS FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TAAAAGCAGAGCTAAAAACGCTCTGCTTTTTCTTATTTTCC
     >>>>>>>       <<<<<<<
1250626..1250646
10..30
-13.5
cotX

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai