Regulated Operon: dltABCDE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
dltA dae + 3952275..3953786
COG1020Q dltA-BAC dltA-STA  
dltB ipa-4r + 3953783..3954970
COG1696M  
dltC ipa-3r + 3954987..3955223
COG0236IQ dltC-BAC dltC-LAB dltC-STA dltC-STR  
dltD ipa-2r + 3955223..3956401
COG3966M x0213-BAC  
dltE ipa-1r + 3956492..3957250
COG3967M  

Operon evidence: Northern blotting (5.0 kb transcript)
Reference: Perego M, et al. (1995), Serizawa M, et al. (2005)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigD Promoter ND 3951975..3952022 ATAAAGATTCATTTTCAAAAACATACGCCGATATATTAATTTGAGGGA Perego M, et al. (1995): DB RG
SigX Promoter -38:+12 3952033..3952082 AAAATGAAACTTTTTGAGCATCTGATCGTCAAATAATCATGTGATTGTCG Cao M & Helmann JD (2004): ROMA RG PE
Spo0A Positive +1:+21 3952071..3952091 ATGTGATTGTCGAAAAAACGG Perego M, et al. (1995): DB FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AACACGCAGGAGAATTAATTTCTCCTGCTTTTTTCATATGAAT
     >>>>>>>>>     <<<<<<<<<
3957238..3957260
-12..10
-16.6
dltE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai