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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | fla-che |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| flgB | + | 1691278..1691667 | COG1815N | flgB-BAC | ||
| flgC | + | 1691667..1692119 | COG1558N | flgC-BAC | ||
| fliE | + | 1692130..1692450 | COG1677NU | x1412-BAC | ||
| fliF | + | 1692496..1694106 | COG1766NU | |||
| fliG | flaA15 | + | 1694119..1695135 | COG1536N | fliG-BAC | |
| fliH | + | 1695254..1695880 | COG1317NU | |||
| fliI | + | 1695877..1697193 | COG1157NU | |||
| fliJ | cheF | + | 1697196..1697639 | COG2882NUO | ||
| ylxF | + | 1697651..1698265 | COG3334S | |||
| fliK | + | 1698278..1699741 | COG3144N | |||
| ylxG | + | 1699738..1700160 | COG1843N | |||
| flgE | flgG | + | 1700182..1700976 | COG4786N | x1650-BAC | |
| Bsu1630a | + | 1700312..1700527 | Uncharacterized conserved protein, possibly involved in motility | |||
| fliL | + | 1701228..1701650 | COG1580N | |||
| fliM | + | 1701684..1702682 | COG1868N | fliM-BAC | ||
| fliY | cheD | + | 1702672..1703808 | COG1776NT | ||
| cheY | cheB | + | 1703834..1704196 | COG2204T | x0812-BAC-1 x0812-BAC-2 | |
| fliZ | + | 1704211..1704870 | COG3190N | |||
| fliP | + | 1704863..1705528 | COG1338NU | |||
| fliQ | + | 1705543..1705812 | COG1987NU | x0122-BAC | ||
| fliR | + | 1705820..1706599 | COG1684NU | fliR-BAC | ||
| flhB | + | 1706599..1707681 | COG1377NU | x0186-BAC | ||
| flhA | + | 1707714..1709747 | COG1298NU | flhA-BAC | ||
| flhF | + | 1709747..1710847 | COG1419N | |||
| ylxH | + | 1710838..1711734 | COG0455D | |||
| cheB | cheL | + | 1711736..1712809 | COG2201NT | ||
| cheA | cheN | + | 1712815..1714833 | COG0643NT | ||
| cheW | + | 1714855..1715325 | COG0835NT | cheW-BAC-1 cheW-BAC-2 | ||
| cheC | ylxJ | + | 1715344..1715973 | COG1776NT | ||
| cheD | ylxK | + | 1715970..1716470 | COG1871NT | ||
| sigD | flaB | + | 1716493..1717257 | COG1191K | sigD-BAC | |
| ylxL | + | 1717286..1717789 |
| Operon evidence: | RNAse protection assay; insertional mutagenesis; deletion of the promoter upstream of flgB |
|---|---|
| Reference: | Werhane H, et al. (2004), Marquez-Magana LM & Chamberlin MJ (1994), Estacio W, et al. (1998) |
| Comments: | Some readthrough into downstream rpsB. The terminator may be factor-dependent. Internal promoter in front of sigD. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -44:+3 | 1691170..1691216 | CGAACTTCATAGACTTTATGCCTGTTATTTCTTACAATAAGCATATA |
West JT, et al. (2000): PE DP, Western blot Estacio W, et al. (1998): PE |
| SigD | Promoter | -41:+11 | 1691011..1691062 | CATTTTTCTTCAAAAAGTTTCAAAAATGCCGAAAAGAAAGGAGAAAAAACAG |
Gilman MZ, et al. (1984): RNA probes Estacio W, et al. (1998): PE |
| Spo0A | Negative | ND | ND | ND |
Molle V, et al. (2003): GS CH |
| DegU | Negative | ND | ND | ND |
Amati G, et al. (2004): RG GS |
| DegU | Positive | -106:-66 | 1691108..1691148 | CTAACAATCTAGGACTTTATACCTAGTTGCAAAATAGATAA |
Tsukahara K, et al (2008): FT Kobayashi K, et al. (2010): AR HB DB GS |
| DegU | Positive | +115:+145 | 1691328..1691356 | AGCGGATATTAAGCAAAAAGTCATAACTA |
Tsukahara K, et al (2008): FT Kobayashi K, et al. (2010): AR HB DB GS |
| SigA | Promoter | -44:+7 | 1716433..1716483 | ATATTCGAACTGTTAAACAAGGTGAAAAAACGATTTAATTAAGGTATTAGG |
Allmansberger R (1997): PE DP |
|