Regulated Operon: yabMNOPQ-divIC-yabR

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yabM
+ 64817..66415
COG2244R  
yabN
+ 66405..67874
COG3956R  
yabO
+ 67877..68137
COG1188J  
yabP spoVUA + 68216..68518

yabP-BAC  
yabQ spoVUB + 68515..69150

 
divIC
+ 69168..69545
COG2919D  
yabR
+ 69626..70012
COG1098J yabR-BAC  

Operon evidence: Northern blotting (5.3 kb transcript)
Reference: Asai K, et al. (2001)
Comments: Internal promoters in front of yabN (3.7 kb trancript), yabP (1.9 kb transcript), divIC (1.0 kb transcript), and yabR (0.5 kb transcript)

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -39:+6 68139..68183 CTTGTTCTAAAAAAACCCCCCACCTCATACAATGCAGTAATAATG Asai K, et al. (2001): NB DB PE
SpoIIID Negative ND ND ND Eichenberger P, et al. (2004): GS AR
SigW Promoter -36:+6 69018..69059 TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG Huang X, et al. (1998): RO
Cao M, et al. (2002): AR
SigX Promoter -36:+6 69018..69059 TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG Huang X & Helmann JD (1998): PE RG DB
Huang X, et al. (1998): RO
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
ATGAAGCATCCGTTCATCCCGACGGATGCTTTTTTATTATCCTC
     >>>>>>>>>      <<<<<<<<<
70040..70063
28..51
-15.7
 yabR

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai