| Factor type | AbrB-SpoVT |
|---|---|
| SWISS-PROT | P08874 |
| SubtiList | BG10100 |
| Consensus seq. | WAWWTTTWCAAAAAAW, TGGNA |
| Comment | Bi-functional expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation acts as the Spo0A-AbrB circuit also involved in catabolite repression reviewed in Klier, A., et al., 1992 (93073719). |
| Link to | Phylogenetic profile , Weight matrix & Motif alignment |
| Regulated gene |
Operon | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
|---|---|---|---|---|---|---|---|---|---|
| abrB | ND | ND | Negative | 45219..45248 | -43:-14 | CAAAATGATTGACGATTATTGGAAACCTTG |
GS FT | Strauch MA, et al. | 1989 |
| aprE | ND | ND | Negative | 1104917..1104989 | -59:+15 | AAAATCATCTCAAAAAAATGGGTCTACTAAAATATTATTCCATCTATTAC AATAAATTCACAGAATAGTCTTT |
GS FT | Strauch MA, et al. | 1989 |
| argC | argCJBD-carA-carB-argF | ND | Positive | ND | ND | ND |
beta-gal | O'Reilly M,et al. | 1994 |
| citB | ND | ND | Positive | ND | -35:+14 | ND |
beta-gal, FT | Kim, H. J., et al. | 2002 |
| comK | ND | ND | Negative | 1116296..1116415 | ND | CATTAAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTG TCGTTTTACAAAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAA AGGATGGAGGCCATAATATG |
FT | Hamoen, L. W., et al. | 2003 |
| dppA | dppA-dppB-dppC-dppD-dppE;depeptide permerase operon | SigA | Negative | 1359656..1359689 | -16:+18 | TTTAATATAATTTGTTAGAATATTCATAATTTAG |
FT DB | Slack FJ, et al. | 1991 |
| fatR | fatR-cyp102A3 | ND | Negative | ND | ND | ND |
beta-gal | Gustafsson, M. C., et al. | 2001 |
| ftsA | ftsA-ftsZ | ND | Negative | 1595633..1595651 | -1:+18 | AATAAACATAAAATGTGAA |
FT | Strauch MA, et al. | 1995 |
| ftsA | ftsA-ftsZ | ND | Negative | 1595667..1595690 | +34:+57 | TTCTGTTGTTATTTTTTGTTACAC |
FT | Strauch MA, et al. | 1995 |
| hpr | ND | ND | Positive | ND | ND | ND |
GS | Strauch MA, et al. | 1989 |
| hutP | hutP-hutH-hutU-hutI-hutG-hutM operon;hutO-CR1 | ND | Positive | 4040667..4040689 | +199:+221 | CAATTGAAACCGCTTCCAAAAAG |
FT | Fisher SH, et al. | 1994 |
| kinB | ND | ND | Negative | around -20 | AAAATGAAGATTATAAATCACAATATTAT |
FT | Strauch MA, et al. | 1995 | |
| pbpE | ND | SigA | Negative | 3534576..3534600 | around -75 | ATGTGATGGGTTAAAAAGGATCTCT |
FT | Strauch MA, et al. | 1995 |
| pbpE | ND | SigA | Negative | 3534543..3534568 | around -40 | GGATTTTTCAAAATATTTGAAACGTT |
FT | Strauch MA, et al. | 1995 |
| rbsR | rbsR-rbsK-rbsD-rbsA-rbsC-rbsB | ND | Positive | 3700264..3700340 | -133:-67 | GAAATCTTCATCCATATTTGTGAAGACTTTGTCAAAAAAAGAGTGAAAAC CTTAAATTTTTCAATTATATATACAAT |
DB | Strauch MA, et al. | 1995 |
| rbsR | rbsR-rbsK-rbsD-rbsA-rbsC-rbsB | ND | Positive | 3700402..3700434 | -4:+29 | CTATGTAAACGGTTACATAAACAAGGAGGAGCT |
DB | Strauch MA, et al. | 1995 |
| rok | ND | ND | Negative | ND | ND | ND |
gel shift | Hoa, T. T., et al. | 2002 |
| sbo | sboA-sboX-albA-albB-albC-albD-albE-albF-albG | ND | Negative | ND | ND | ND |
abrB mutation | Zheng G et al. | 2000 |
| sigW | ND | SigW | Negative | 194824..194850 | +14:+41 | GAGGTTAGATAAATATGGAAATGATGA |
beta-gal, FT | Qian, Q., et al. | 2002 |
| sinI | sinI-sinR | SigA | Negative? | 2551579..2551601 | +24:+46 | TTTAATGGCAAATGACTTCCAGA |
reverse transcriptase extension, FT | Shafikhani, S. H., et al. | 2002 |
| spo0E | ND | SigA | Negative | 1429903..1429937 | -39:-5 | TATGTTTACAAATAAAGTATAATCTGTAATAATGC |
GS FT | Strauch MA, et al. | 1989 |
| spo0H | ND | SigA | Negative | 116537..116576 | -35:+5 | TGACGCTTTTTTGCCCAATACTGTATAATATTTCTATCTA |
FT | Strauch MA, et al. | 1995 |
| spoVG | ND | SigH | Negative | 55753..55822 | -75:-6 | TAACTATATCCTATTTTTTCAAAAAATATTTTAAAAACGAGCAGGATTTC AGAAAAAATCGTGGAATTGA |
GS FT | Furbass R, et al. | 1991 |
| ycnK | ND | ND | Negative | ND | ND | ND |
AR, RT-PCR | Hamon MA,et al. | 2004 |
| yoaW | yoaW | ND | Negative | ND | ND | ND |
AR, RT-PCR | Hamon MA,et al. | 2004 |
| yocH | ND | ND | Negative | ND | ND | ND |
AR, RT-PCR | Hamon MA,et al. | 2004 |
| yvqH | ND | ND | Negative | ND | ND | ND |
AR, RT-PCR | Hamon MA,et al. | 2004 |
| yxbB | ND | ND | Negative | ND | ND | ND |
AR, RT-PCR | Hamon MA,et al. | 2004 |
| yxbC | ND | ND | Negative | ND | ND | ND |
AR, RT-PCR | Hamon MA,et al. | 2004 |