| Factor type | |
|---|---|
| SWISS-PROT | P06222 |
| SubtiList | BG10235 |
| Consensus seq. | (g/t)(c/a)ATATT(-35) - 14bp -CATACA-T(-10), G(g/t)(C/a)AT(A/g)(T/a)(t/c)(-35) - 13bp - (C/a)ATACA(a/c)T(-10) |
| Comment | inactive precursor, processed by SpoIIGA after Tyr-27; synthesized shortly after the start of sporulation but do not become active until after polar division; expression negatively regulated by sigma-K; disappears in the forespore shortly after septation through a SpoIIIE-dependent process, probably by selective degradation of both SigE and SpoIIGA; pro-sigma-E associated with the cytoplasmic membrane in the predivisional sporangium, then accumulated at the mother cell side of the sporulation septum, and mature sigma-E distributed throughout the mother cell cytoplasm; transcription reduced, and probably processing impeded, in hyperosmotic conditions |
| Link to | Phylogenetic profile , Weight matrix & Motif alignment |
| Regulated gene |
Operon | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
|---|---|---|---|---|---|---|---|
| asnO | asnO | 1156447..1156491 | -40:+5 | ACAAATCAACTATCTGCCTATAGATGCATAAACTTACTAAGGTG C |
Northern blot, PE | Yoshida, et al. | 1999 |
| bofA | bofA | 29703..29743 | ND | AGTGGTCTAAACTCCTGGATCTTCTCATAAGCTTGTACTAG |
ND | Ricca E, et al. | 1992 |
| cotE | cotE | 1774203..1774245 | ND | TAAGTAAAGTTTCTAGGC-ACCCCTGCATACAATGGAACAGAAA |
ND | Roels S, et al. | 1992 |
| cotE | ND | 1774273..1774313 | ND | AAATGCACACTAGACAAA-TGCCCAGCATAAGATAACACGAA |
ND | Zheng LB, et al. | 1990 |
| cotJA | cotJA-cotJB-cotJC | 755176..755219 | ND | TTAGTCATAATCATGCC-TCCTGCCTCATACCTATTAAGGTCAT T |
ND | Henriques AO, et al. | 1995 |
| cwlD | cwlD | 156548..156596 | ND | GTAATCATATTTCCCGAC-CCTGTCCCATAGTTATGTAATAACG GACAAG |
ND | Sekiguchi J, et al. | 1995 |
| cwlJ | cwlJ | 281949..281997 | ND | TCCGTCATCACTTCTGAA-GTAATGAAATATGATGAAAAGAGAT CAAGGG |
ND | Ishikawa S, et al. | 1998 |
| dacB | dacB | 2423746..2423788 | ND | TTATTCATAACTGATGG--ACATGCGCATAAACTTGTACAAACCA |
ND | Simpson EB, et al. | 1994 |
| gerM | ND | 2902193..2902232 | ND | TTCGGTCTATTTCCTAAAGAGGCTCGTATACATAATAGTA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| glgB | glgBCDAP | 3170702..3170744 | ND | CTTCGAATAAATACTATA-AATGAAAACTATGATGTCAGAAAGG |
ND | Hay RE, et al. Roels S, et al. Kiel JA, et al. |
1986 1992 1994 |
| mmgA | mmgABCDE | 2513274..2513316 | ND | TCATTCATTCATGCCCGTTTCAAAGCATACATTCATAGAAGAC |
ND | Bryan EM, et al. | 1996 |
| nucB | ND | 2652041..2652085 | ND | TTAAAAATATTCTTCAT-CAAGCGCCCATACATTGAAATGAACAAA |
Other | van Sinderen D, et al. | 1995 |
| phoB | phoB-ydhF | 621137..621185 | ND | CTAAAACTTCTCATAAAA-GAATAACCATTATTTAAGGGTGCCA GTTCAT |
PE DP | Chesnut RS, et al. | 1991 |
| prkA | ND | 972407..972445 | ND | CAAAGCATGTATCACGAG-ATGGCGGCATAGATTGTATCA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| safA | yrbA | 2845116..2845161 | ND | TCCTTTACTCATAACTTCTTTT-GTTCAGGCATATGTTGTGAAG AAA |
PE | Takamatsu H et al. | 1999 |
| spoIID | spoIID | 3776804..3776846 | ND | AGAGTCATATTAGCTTGT-CCCTGCCCATAGACTAGACTAGAGT |
ND | Rong S, et al. Roels S, et al. |
1986 1992 |
| spoIIIAA | spoIIIAA-spoIIIAB-spoIIIAC-spoIIIAD-spoIIIAF-spoIIIAF-spoIIIAG-spoIIIAH | 2536872..2536913 | ND | CTTGTCATAAAGTCTGC--CTCACATCATACATTTTAAAGAAGC |
ND | Illing N, et al. Roels S, et al. |
1991 1992 |
| spoIIIAG | spoIIIAG-spoIIIAH | 2533240..2533293 | ND | AAATAGAAATACAAGCTTCCCAGCGCGCATATATTCTAGAAGAAAT GGCTGTCC |
ND | 2002 | |
| spoIIM | spoIIM | 2450266..2450307 | ND | AAGGGCATGTTTTTCTGTTTCTTTCATACAATCTATTAAATC |
ND | Smith K, et al. | 1993 |
| spoIIP | spoIIP-yqxA | 2633684..2633727 | ND | ACAGTTCTACTTCCTCT-AGCTTGTTCATAGAGTAATTACTAGA C |
ND | Frandsen N, et al. | 1995 |
| spoIVA | ND | 2386932..2386975 | ND | GATGTCATATTCAAATAGGACAACGTCATACACATATAGTGTCC |
ND | Roels S, et al. | 1992 |
| spoIVA | spoIVA | 2387019..2387060 | ND | AAAGGAATGAACCTTTC--TCCCTTGCATACAAATAGGGAGAAA |
ND | Roels S, et al. | 1992 |
| spoIVCA | ND | 2654205..2654254 | ND | AAAATCTCCTCATTTGGACAAACAGCTGTTACATAGCATTACCCAA GGGG |
PE | Sato T et al. | 1994 |
| spoIVCB | spoIVCB | 2652145..2652186 | ND | ACAGACACAGACAGCCTC-CCGGTCACATACATTTACATATAG |
ND | Kunkel B, et al. Roels S, et al. |
1988 1992 |
| spoIVFA | spoIVFA-spoIVFB | 2856876..2856918 | ND | AACCGAATATTTGCCATG-GACAAGACATATGATGTACAAACCC |
ND | Roels S, et al. | 1992 |
| spoVB | spoVB | 2828712..2828754 | ND | CTTGTCATGCTTGGACGACATATACGCATATCTTTATTGTATA |
ND | Popham DL, et al. Roels S, et al. |
1991 1992 |
| spoVD | spoVD | 1583453..1583496 | ND | ATCGTTCTACCTGTCCA-AATTCAGGCATAAAATGAAACAAGCC T |
ND | Daniel RA, et al. | 1994 |
| spoVE | ND | 1589520..1589562 | ND | GGTGACATGTTTATAGA--TGCCGTGCATATGCTTAAGTAAGGG C |
ND | Theeragool G, et al. | 1993 |
| spoVE | spoVE | 1589379..1589427 | ND | CTGGGAATACAACATGTC-AAACGTGTCGATAATGTTGAACAAGCA GTAT |
ND | Miyao A, et al. Theeragool G, et al. |
1993 1993 |
| spoVID | spoVID-ysxE | 2871851..2871894 | ND | CCACTCATATTTTCTCC-AGTTCATACATACACCTTTAGTGACA T |
ND | Beall B, et al. | 1993 |
| spoVK | spoVK | 1873228..1873270 | ND | CATGGTTTGTCCACCCCATGTCCGTGAATACAATAAGAAATAA |
ND | Foulger D, et al. Roels S, et al. |
1991 1992 |
| spoVM | spoVM | 1654619..1654662 | ND | GAGGTACTTTTTCGTTT-GCAAAAGGCATATTAATAATGATAAG A |
ND | Levin PA, et al. | 1993 |
| spoVR | spoVR | 1014865..1014907 | ND | ACTATCATCTTTTGTCTGGCGGGCTCATACATTATAGATAAGT |
ND | Beall B, et al. | 1994 |
| usd | usd-spoIIID-mbl | 3747880..3747922 | ND | TTTAGCATATTCCCAAAA-GAATGCTAATACACTGTTACAAACC |
ND | Kunkel B, et al. Tatti KM, et al. Roels S, et al. Decatur A, et al. |
1989 1991 1992 1997 |
| yaaH | yaaH | 25180..25222 | -40:+3 | ATAAACATGATCAGCGCTTTTCTTTCATACATTGATAGCGATA |
PE, Northan hybri. | Kodama T, et al. Kobayashi, K., et al. |
1999 2001 |
| yabP | yabP-yabQ-divIC-yabR | 68137..68181 | -39:+6 | CTTGTTCTAAAAAAACCCCCCACCTCATACAATGCAGTAATAAT G |
Asai K, et al. | 2001 | |
| ybaN | ND | 160577..160615 | ND | TCGGTTATATTCAATTGT-CCATGCTCATAAGATGTAAA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| ycgF | ND | 334125..334163 | ND | TTGTGCATAGCTTGGCCC-GTTCCCGAATAAATTGTACAA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| ydcA | ND | 515212..515250 | ND | TACGTACTATTTAAATGG-TTTGTCTCATAAACGTGTTAC |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| ydcC | ND | 515636..515674 | ND | GTCTGCATATTAGGGAAA-CCCCACTCATATATTTGATAG |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| ydhD | ydhD | ND | ND | ND |
Northern hybridization | Kodama, et al. | 2000 |
| yfhS | yfhS | 936348..936396 | ND | TAGCGTATAGTTCTTTT--ATTTCCACAAACAATAATGGCAAGA ACTTTAA |
Fujita M Yamamoto H, et al. |
1999 1999 |
|
| yhaX | ND | 1055941..1055979 | ND | GTTGTTCTAAACACAGAG-ACAGGGTCATATCCTATACAC |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yhbH | ND | 974441..974480 | ND | GTTTGTCAATTAAACGTGCATATGTGCATATGATGAATAT |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yjbX | ND | 1247921..1247959 | ND | TTTCTTCTGATTTTCAGC-TTTCTGTCATATAGATAGAAT |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yjmC | yjmCDEFGHIJ(No experimental validation) | 1302632..1302680 | -46:+3 | TATAATATAAAGAATATTTAAAATAATTTGTAAATAAAATGTGTTT GTA |
PE, beta-gal | Mekjian KR et al. | 1999 |
| yknT | ND | 1494695..1494737 | ND | AGAGGAATAGCTGTTCA--GTATTTGCATATTGTAGTGTTAACAT |
ND | Henriques AO, et al. | 1997 |
| ykvI | ND | 1437320..1437357 | ND | TTCGTCTTTTCAAGGAA--CTTGTCTCATAGGTTATAAAA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| ykvU | ykvU-ykvV | 1448494..1448532 | ND | AATAAAATAATTTTTGAA-CTTGTCTCATATGATGTTGGT |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| ylbJ | ND | 1571206..1571245 | ND | TATGGTCTAAACTGAACCCCTATGCTCGTATATTAGTACA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yngJ | ND | 1956592..1956630 | ND | CAGGGAATGATTATAGAA-CTCGCCTAATAGGATGTTACA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yoaW | yoaW | 2046885..2046927 | ND | GCCTGAATATTTCTTTGA-GCTAATGAATACAATAAATCGATAG |
S1 RO | Rather PN, et al. Roels S, et al. |
1986 1992 |
| ypjB | ND | 2361557..2361595 | ND | GTTGGTCTATCCTTGTCC-CTTTCTTCATATTCTGTAAGG |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yqfC | ND | 2616200..2616238 | ND | AAAGTGTTAGAACCTCCT-TTCAAATCATACACATGAGAT |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yqfZ | ND | 2587869..2587907 | ND | TTTGTCATGAATCGAAAT-GGACAAGCATACTATGGTATA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yteV | ND | 3077636..3077679 | ND | TCTATCATAACGCTGTT-CCAAACGGAATAGATTGATAGAGAAAG |
ND | Henriques AO, et al. | 1997 |
| ytrH | ND | 2993741..2993779 | ND | ATCATCATACTTGTCCTG-AAAGCTCAATATGATATAAAA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| ytvI | ND | 2982132..2982169 | ND | GTATTCATATTCAGCCGC--AGCGTGAATACATATAAAAA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| ytxC | ND | 2961495..2961533 | ND | TTACGTCTATTTTAAAAA-CATCCCCCATATACTTGTAAC |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yunB | ND | 3322271..3322309 | ND | CTATTACTATGTCCCCTC-TTACAAGCATACATTGTGATA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yuzC | ND | 3256673..3256712 | ND | TTTGTCATATTCGGCAATTAGGGATCTATACATATAGAAA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yxjC | yxjCDEF | 4003222..4003263 | -36:+5 | ATCGGAATAGTTGGCCCA-CGCTTCTCGTACATATGGAAAGGG |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yyaD | ND | 4203501..4203539 | ND | TATGGCATGTTTGCTTTC-CTTTATTTATATAGTAACAAT |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |
| yybI | ND | 4176740..4176777 | ND | TATGTCTTTGATGTGCCA--TTCCTGCATATAATGATTCA |
AR, 5'-RACE-PCR | Eichenberger, P., et al. | 2003 |