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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | abrB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| abrB | cpsX | - | 44846..45136 | transcriptional regulator | COG2002 | abrB-BAC-1 abrB-BAC-2 |
| Operon evidence: | Northern blotting (0.4 kb transcript); upstream and downstream genes are on the opposite strand |
|---|---|
| Reference: | Perego M, et al. (1988), BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | -43:-14; -29:+1 | 45219..45248 | CAAAATGATTGACGATTATTGGAAACCTTG |
Strauch MA, et al. (1989): GS FT |
| SigA | Promoter | -48:+8 | 45212..45267 | TCTTACAATCAATAGTAAACAAAATGATTGACGATTATTGGAAACCTTGTTATGCT |
Perego M, et al. (1988): PE NB RG |
| SigA | Promoter | -50:+8 | 45198..45255 | TAGTAAACAAAATGATTGACGATTATTGGAAACCTTGTTATGCTATGAAGGTAAGGAT |
Perego M, et al. (1988): PE NB RG, binding site mutation |
| Spo0A | Negative | +7:+34 | 45172..45199 | ATTTTGTCGAATAATGACGAAGAAAAAT |
Perego M & Hoch J (1988): Genetics and Biotechnology of Bacilli, Vol. 2, pp. 129-134: RG DB Strauch M, et al. (1990): FT Fujita M, et al. (2005): RG GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACGTTCTTGTTATGACACAAGAACGTTTTTTTATTGCTTA >>>>>>>>> <<<<<<<<< |
abrB |
|