Regulated Operon: araE

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
araE yvbR - 3483103..3484497 permease COG0477  

Operon evidence: Northern blotting (1.7 kb transcript)
Reference: Sa Nogueira I & Ramos SS (1997), Genbank Y12105
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AraR Negative -6:+14 3484587..3484606 ATATTTGTACGTACTAATTA Sa Nogueira I & Ramos SS (1997): DB HM
Mota LJ, et al. (1999): FT
AraR Negative +36:+60 3484541..3484565 TAATATAAGTACGTACAATTGAAGG Sa Nogueira I & Ramos SS (1997): DB HM
Mota LJ, et al. (1999): FT
CcpA Negative +67:+80 3484521..3484534 TGAAAACGCTTTAC Inacio JM, et al. (2003): RG NB
SigA Promoter -39:+5 3484596..3484639 AACATTGACAGAAAATGCAAACAAGATTATTCTATATTTGTACG Sa Nogueira I & Ramos SS (1997): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TGAAACAGCCCTTTCTACGGGAAGGGCTGTTTATATTGGGATGC
     >>>>>>>>>>    <<<<<<<<<<
3483063..3483086
17..40
-19.8
 araE

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai