Regulated Operon: argCJBD-carAB-argF

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
argC
+ 1194338..1195378 N-acetylglutamate gamma-semialdehyde dehydrogenase COG0002  
argJ argA, argE + 1195398..1196618 amino-acid acetyltransferase COG1364 argJ-BAC argE-BAC  
argB
+ 1196633..1197409 N-acetylglutamate 5-phosphotransferase COG0548  
argD
+ 1197406..1198563 N-acetylornithine aminotransferase COG4992 argD-STA x1585-BAC  
carA cpa + 1198634..1199695 carbamoyl-phosphate transferase-arginine (subunit A) COG0505  
carB cpa + 1199688..1202780 carbamoyl-phosphate transferase-arginine (subunit B)
carB-STR  
argF
+ 1202768..1203727 ornithine carbamoyltransferase COG0078  

Operon evidence: Genome analysis
Reference: O'Reilly M & Devine KM (1994), O'Reilly M, et al. (1994), Ogura M, et al. (1997)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Positive ND ND ND O'Reilly M, et al. (1994): RG
AhrC Negative -61:-44 1194245..1194262 AATGAATAAAAATATTAA Czaplewski LG, et al. (1992): GS FT
Smith MC, et al. (1986): Mung-bean nuclease mapping
AhrC Negative -31:-14 1194274..1194290 AATTAATTTTTATTCAT Czaplewski LG, et al. (1992): GS FT
Smith MC, et al. (1986): Mung-bean nuclease mapping
AhrC Negative +116:+133 1194421..1194438 ATGCATACTTTATTCATC Czaplewski LG, et al. (1992): GS FT
Smith MC, et al. (1986): Mung-bean nuclease mapping
SigA Promoter -44:+17 1194262..1194322 AATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAA O'Reilly M, et al. (1994): PE
Smith MC, et al. (1986): S1, mung-bean nuclease mapping

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAACTGCTGAGCCAAACTCAGCAGTTTTTTTGATGGCAA
     >>>>>>>>     <<<<<<<<
1203721..1203741
-6..14
-14.3
 argF

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai