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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | citM-yflN |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| citM | yflO | + | 833720..835021 | secondary transporter of divalent metal ions/citrate complexes | COG2851 | citM-BAC |
| yflN | + | 835077..835871 | COG0491 |
| Operon evidence: | Northern blotting (2.4 kb transcript) |
|---|---|
| Reference: | Yamamoto H, et al. (2000) |
| Comments: | Northern blotting results in BSORF also show a monocistronic yflN transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CcpA | Negative | +37:+59 | 833685..833707 | AAAATGTAAGCGGATTCATTTAA |
Miwa Y, et al. (2000): RG |
| CitT | Positive | -36:-85 | 833564..833614 | ATCAAAAAGAACAAAACGGTTTTAAAAAATTAAAAATACAAAAAAACCAAA |
Yamamoto H, et al. (2000): NB FT |
| CitT | Positive | -196:-168 | 833453..833482 | AACAGCAGGGAAACGAAACGGTTTTTAGAA |
Yamamoto H, et al. (2000): NB FT |
| SigA | Promoter | -48:+12 | 833601..833660 | ACAAAAAAACCAAATTATTTACTTGCGGTTGGTTTTCCCATACGATGGCAAAAAGGCAAG |
Yamamoto H, et al. (2000): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTTGACACCCGCACCACGCGGGTGTTTTTTATTGTTTTC >>>>>>> <<<<<<< |
yflN |
|