Regulated Operon: ctaA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ctaA
- 1557341..1558261 heme-containing membrane protein COG1612 ctaA-BAC ctaA-STA  

Operon evidence: RNase protection hybridization
Reference: Mueller JP & Taber HW (1989)
Comments: The RNase protection hybridization shows that transcription ends in the TTTGGTCTTTTTT stretch.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ResD Positive -108:-55 1558343..1558395 TACATTTTCCAGAAGCCGTCATTCTATTATATTTTTGTGAACAAAAGGCTCTG Paul S, et al. (2001): GS PE, in-vitro transcription assay
Zhang X & Hulett FM (2000): GS FT DP RG
Sun G, et al. (1996): DB
ResD Positive -2:+43 1558247..1558291 GCAGCAGTATGTTAAGAAGGTGAATATTGTATGAATAAAGCATTA Zhang X & Hulett FM (2000): GS FT DP RG
Sun G, et al. (1996): DB
SigA Promoter -39:+9 1558295..1558342 GGAATTGCCACAAAACACATATTCGCTTACACTTGGAACGTATATAAA Paul S, et al. (2001): PE, in-vitro transcription assay
SigE Promoter -47:+6 1558284..1558336 GCCACAAAACACATATTCGCTTACACTTGGAACGTATATAAAATTGCAGCAGT Paul S, et al. (2001): PE DB
Mueller JP & Taber HW (1989): S1

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CATAAGGACTCAAGACCAAAGCCTTAGGCGGCTTTGGTCTTTTTTATGTCTTGT
             >>>>>>>>>>      <<<<<<<<<<
1557307..1557332
9..34
-19.2
ctaA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai