 |
Copyright: Human Genome Center, Inst. Med.
Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Factor type | LuxR/UhpA |
|---|---|
| SWISS-PROT | P35163 |
| SubtiList | BG10534 |
| Consensus seq. | ANNTNTTTNNNAAGTGTT |
| Comment | resD seems to form a two-component signal transduction system with resE and plays a regulatory role in respiration. Interactions with resABCDE operon and ctaA may be indirect |
| Link to | Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs |
| Operon | Regulated Gene | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|---|---|
| ctaA | ctaA | SigA;SigE(?) | Positive | 1558343..1558395 | -108:-55 | TACATTTTCCAGAAGCCGTCATTCTATTATATTTTTGTGAACAAAAGGCTCTG |
Paul S, et al. (2001): GS PE, in-vitro transcription assay Zhang X & Hulett FM (2000): GS FT DP RG Sun G, et al. (1996): DB |
| ctaA | ctaA | SigE(?) | Positive | 1558247..1558291 | -2:+43 | GCAGCAGTATGTTAAGAAGGTGAATATTGTATGAATAAAGCATTA |
Zhang X & Hulett FM (2000): GS FT DP RG Sun G, et al. (1996): DB |
| ctaBCDEFG | ctaB | None | Positive | 1558468..1558498 | None | TTGGTAAAATTCATAAAAAGTTCACAAATAA |
Liu X, et al. (1998): DB Zhang X & Hulett FM (2000): GS FT |
| cydABCD | cydA | SigA | Positive | 3978467..3978516 | -107:-58 | GCCGACATAAATAAGCAACAAAATAGACAAAAATCCGTCACATAGTGCGG |
Puri-Taneja A, et al. (2007): RG FT |
| narK-fnr | fnr | SigA | Positive | 3831324..3831341 | -62:-44 | CATTCACAAGATTGTTAG |
Nakano MM, et al. (1996): DB RG Nakano MM, et al. (2001): RG |
| qcrABC | qcrA | SigA | Positive | ND | ND | ND |
Sun G, et al. (1996): DB HB |
| hemZ | hemZ | SigA | Positive | ND | ND | ND |
Homuth G, et al. (1999): RG |
| hmp | hmp | SigA | Positive | 1371979..1372018 | -79:-39 | ATTGATAATTTTGTGACAACTTTATTAAAGATTCATTTTA |
LaCelle M, et al. (1996): DB Nakano MM, et al. (2000): DP FT GS Nakano MM, et al. (2001): RG |
| ldh-lctP | ldh | SigA | Positive | ND | ND | ND |
Cruz Ramos H, et al. (2000): RG DB |
| nasBCDEF | nasD | None | Positive | 357811..357854 | -83:-39 | TAAAATTTTTAGAACTTTTCGTATATTTTGTTACATTTTATAAC |
Nakano MM, et al. (1998): DB Nakano MM, et al. (2001): RG |
| phoPR | phoP | None | Positive | ND | ND | ND |
Sun G, et al. (1996): DB |
| resABCDE | resA | SigA | Positive | ND | ND | ND |
Sun G, et al. (1996): DB Nakano MM, et al. (2001): RG |
| sboAX-albABCDEFG | sboA | SigA | Positive | ND | ND | ND |
Nakano MM, et al. (2000): DB Nakano MM, et al. (2001): RG |
| nrdIEF-ymaB | ymaA | SigA | Positive | 1867695..1867720 | -69:-44 | AAAATATGAATTTTTCATAAAAACGA |
Hartig E, et al. (2006): RG DB SDM |
|