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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | dppABCDE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| dppA | dciAA | + | 1359708..1360532 | D-alanyl-aminopeptidase | COG2362 | |
| dppB | dciAB | + | 1360549..1361475 | dipeptide ABC transporter (permease) | COG0601 | |
| dppC | dciAC | + | 1361481..1362443 | dipeptide ABC transporter (permease) | COG1173 | |
| dppD | dciAD | + | 1362448..1363455 | dipeptide ABC transporter (ATP-binding protein) | COG0444 | |
| dppE | dciAE | + | 1363458..1365107 | dipeptide ABC transporter (dipeptide-binding protein) | COG4166 |
| Operon evidence: | Northern blotting (5.9 kb transcript) |
|---|---|
| Reference: | Mathiopoulos C, et al. (1991), Yoshida K, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | -16:+18 | 1359656..1359689 | TTTAATATAATTTGTTAGAATATTCATAATTTAG |
Slack FJ, et al. (1991): FT DB |
| CodY | Negative | -7:+31 | 1359665..1359702 | ATTTGTTAGAATATTCATAATTTAGTAAAAAAGGAGGA |
Serror P, et al. (1996): GS FT |
| SigA | Promoter | -46:+19 | 1359626..1359690 | TTCCCAGTTATATTGCATTTTTCCTCTTTTTTTAATATAATTTGTTAGAATATTCATAATTTAGT |
Slack FJ, et al. (1991): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GGAAATACTGCTTCTTTATGCGAAGGAGCGGTATTTTTCCTCTTTCTT >>>>>>>>>>>> <<<<<<<<<<<< |
dppE |
|