Transcription factor: CodY

Factor type	Unique (MITOCH-CARRIER)
SWISS-PROT	P39779
SubtiList	BG10968
Consensus seq.	No consensus seq has been deduced: A+T rich stretch?
Comment	transcriptional regulator; negative regulation of srfA and comK genes (in the presence of casamino-acids), dpp operon
Link to	Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
acsA	acsA	SigA	Negative	ND	ND	ND	Fisher SH (1999): Unpublished data
citB	citB	SigA	Negative	ND	ND	ND	Kim HJ, et al. (2002): RG FT
citB	citB	SigA	Negative	ND	ND	ND	Kim HJ, et al. (2002): RG FT
comK	comK	SigA	Negative	`1116300..1116364`	`-77:+13`	AAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGAT	Serror P, et al. (1996): DB FT GS
dppABCDE	dppA	SigA	Negative	`1359665..1359702`	`-7:+31`	ATTTGTTAGAATATTCATAATTTAGTAAAAAAGGAGGA	Serror P, et al. (1996): GS FT
gabP	gabP	SigA	Negative	ND	ND	ND	Ferson AE, et al. (1996): DB DP
hag	hag	SigD	Negative	`3634895..3634954`	`+70:+129`	CATATTCAGGGAGGAACAAAACAATGAGAATTAACCACAATATTGCAGCGCTTAACACAC	Bergara F, et al. (2003): DB RG GS FT
hut	hutP	SigA	Negative	`4040466..4040491`	`-3:+23`	CTCAGTTAATAGTTATCAGAATTTTT	Fisher SH, et al. (1996): DB DP
ilvA-ypmP	ilvA	None	Negative	ND	ND	ND	Molle V, et al. (2003): AR Mader U, et al. (2004): NB
ilvBHC-leuABCD	ilvB	SigA	Negative	`2896518..2896717`	`-199:+1`	TCTTCCATGTTTATATAAAATTAAATAATTCTGGTGTATTCTTGATAGATTAATAAAAAAATTATAAAAACTTTTAACATTTGCAATTCCTTTTGTACCAATAATGAAAGCGTATACAATATAGATTGATTAATCAAAATTGTCTAATAATTTTAAAAAATGCTGTTGACACTGCGTCCAAAGCGGCGTAATATGAGTTC	Molle V, et al. (2003): AR RG, ChIP-on-chip, GS Mader U, et al. (2004): NB Shivers RP, et al. (2004): FT
ilvD	ilvD	None	Negative	ND	ND	ND	Molle V, et al. (2003): AR RG, ChIP-on-chip, GS Mader U, et al. (2004): NB
ptb-bcd-buk-lpdV-bkdAABB	ptb	SigL	Negative	ND	ND	ND	Debarbouille M, et al. (1999): RG
rapC-phrC	rapC	SigA	Negative	ND	ND	ND	Lazazzera BA, et al. (1999): RG
srfAA-srfAB-comS-srfAC-srfAD	srfAA	SigA	Negative	`376197..376283`	`-38:+49`	CGGTGATAAAAACATTTTTTTCATTTAAACTGAACGGTAGAAAGATAAAAAATATTGAAAACAATGAATAAATAGCCAAAATTGGTT	Wray LV Jr, et al. (1996): DB FT GS
ureABC	ureA	SigA	Negative	ND	ND	ND	Debarbouille M, et al. (1997): DP DB
ybgE	ybgE	None	Negative	ND	ND	ND	Molle V, et al. (2003): AR RG, ChIP-on-chip, GS Mader U, et al. (2004): NB