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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | rapC-phrC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| rapC | yclL | + | 428399..429547 | response regulator aspartate phosphatase | COG0457 | |
| phrC | + | 429531..429653 | regulator of the activity of phosphatase RapC and competence and sporulation stimulating factor (CSF) |
| Operon evidence: | transcriptional fusions; downstream gene is in the opposite direction |
|---|---|
| Reference: | Carter HL 3rd, et al. (1990), Lazazzera BA, et al. (1999) |
| Comments: | Northern blotting results in BSORF show various transcripts in this region. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CodY | Negative | ND | ND | ND |
Lazazzera BA, et al. (1999): RG |
| ComA | Positive | -72:+7 | 428295..428373 | TTGCGTGCTCCCGAAAACAAAGATTGCGTGTTTTTCGGGTTGGGACGGCCTATAAACATGATAAAATATGACATAAACA |
Lazazzera BA, et al. (1999): DP HM PE Bongiorni C, et al. (2005): GS |
| SigA | Promoter | -36:+4 | 428331..428370 | GGGTTGGGACGGCCTATAAACATGATAAAATATGACATAA |
Lazazzera BA, et al. (1999): PE |
| SigH | Promoter | -40:+3 | 429408..429450 | TAGAGGATTTAGCCCTAGAAGTAGCAAAATATTACTATGAACA |
Carter HL 3rd, et al. (1990): PE RO, in-vitro transcription Lazazzera BA, et al. (1999): RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ACAAGCCCCTTCTCATTAGCGAGAAGGGGTTTTTCTTTTCAAAA >>>>>>>>> <<<<<<<<< |
phrC |
|