Regulated Operon: rapC-phrC

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rapC yclL + 428399..429547 response regulator aspartate phosphatase COG0457  
phrC
+ 429531..429653 regulator of the activity of phosphatase RapC and competence and sporulation stimulating factor (CSF)
 

Operon evidence: transcriptional fusions; downstream gene is in the opposite direction
Reference: Carter HL 3rd, et al. (1990), Lazazzera BA, et al. (1999)
Comments: Northern blotting results in BSORF show various transcripts in this region.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CodY Negative ND ND ND Lazazzera BA, et al. (1999): RG
ComA Positive -72:+7 428295..428373 TTGCGTGCTCCCGAAAACAAAGATTGCGTGTTTTTCGGGTTGGGACGGCCTATAAACATGATAAAATATGACATAAACA Lazazzera BA, et al. (1999): DP HM PE
Bongiorni C, et al. (2005): GS
SigA Promoter -36:+4 428331..428370 GGGTTGGGACGGCCTATAAACATGATAAAATATGACATAA Lazazzera BA, et al. (1999): PE
SigH Promoter -40:+3 429408..429450 TAGAGGATTTAGCCCTAGAAGTAGCAAAATATTACTATGAACA Carter HL 3rd, et al. (1990): PE RO, in-vitro transcription
Lazazzera BA, et al. (1999): RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ACAAGCCCCTTCTCATTAGCGAGAAGGGGTTTTTCTTTTCAAAA
     >>>>>>>>>      <<<<<<<<<
429661..429684
8..31
-18.1
phrC

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai