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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | rbsRKDACB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| rbsR | + | 3700438..3701418 | transcriptional regulator (LacI family) | COG1609 | ||
| rbsK | + | 3701420..3702301 | ribokinase | COG0524 | rbsK-BAC | |
| rbsD | + | 3702298..3702693 | ribose ABC transporter (membrane protein) | COG1869 | ||
| rbsA | + | 3702709..3704190 | ribose ABC transporter (ATP-binding protein) | COG1129 | rbsA-BAC | |
| rbsC | + | 3704192..3705160 | ribose ABC transporter (permease) | COG1172 | ||
| rbsB | + | 3705172..3706089 | ribose ABC transporter (ribose-binding protein) | COG1879 | rbsB-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Woodson K & Devine KM (1994) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Positive | -133:-67 | 3700264..3700340 | GAAATCTTCATCCATATTTGTGAAGACTTTGTCAAAAAAAGAGTGAAAACCTTAAATTTTTCAATTATATATACAAT |
Strauch MA, et al. (1995): DB FT |
| AbrB | Positive | -4:+29 | 3700402..3700434 | CTATGTAAACGGTTACATAAACAAGGAGGAGCT |
Strauch MA, et al. (1995): DB FT |
| CcpA | Negative | -11:+23 | 3700395..3700428 | AATCTATCTATGTAAACGGTTACATAAACAAGGA |
Woodson K, et al. (1994): PE |
| SigA | Promoter | -49:+18 | 3700357..3700423 | TTTGATATTTTTATTGCTAACTTCGGATTGTTCATGATAATCTATCTATGTAAACGGTTACATAAAC |
O'Reilly M, et al. (1994): PE |
|