Regulated Operon: recA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
recA recE + 1763917..1764960 multifunctional SOS repair regulator COG0468 recA-BAC recA-STA recA-STR  

Operon evidence: Northern blotting (1.2 kb transcript)
Reference: Cheo DL, et al. (1993)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComK Positive -150:-130 1763735..1763755 GCAAAAATAATATTTTCAGCA Hamoen LW, et al. (2001): FT GS
Haijema BJ, et al. (1996): FT GS RG DB DP
Cheo DL, et al. (1992): DP RG
ComK Positive -120:-95 1763765..1763790 CCTAAGAAAACATGATTTCTCTGATA Hamoen LW, et al. (2001): FT GS
Haijema BJ, et al. (1996): FT GS RG DB DP
Cheo DL, et al. (1992): DP RG
ComK Positive -95:-75 1763790..1763810 ACATTATGATATTTTGATAGG Hamoen LW, et al. (2001): FT GS
Haijema BJ, et al. (1996): FT GS RG DB DP
Cheo DL, et al. (1992): DP RG
ComK Positive -65:-35 1763822..1763842 GAAAAAATCCGAATATGCGTT Hamoen LW, et al. (2001): FT GS
Haijema BJ, et al. (1996): FT GS RG DB DP
Cheo DL, et al. (1992): DP RG
LexA Negative -60:-37 1763826..1763849 AAATCCGAATATGCGTTCGCTTTT Raymond-Denise A & Guillen N (1992): DB RG
Lovett CM Jr, et al (1993): GS, promoter mutations
Haijema BJ, et al. (1996): DB GS DP, Western blot
Miller MC, et al. (1996): GS, in-vitro transcription
Winterling KW, et al. (1997): GS RG, promoter mutations
Winterling KW, et al. (1998): GS FT RG, promoter mutation
Hamoen LW, et al. (2001): GS
Au N, et al. (2005): GS AR DB
Groban ES, et al. (2005): GS, promoter mutations
SigA Promoter -45:+20 1763841..1763905 TTCGCTTTTTTCTTGGCAAATCCCTTCAAACAGGGTATAGTATATGTAGTGGTAACATAAAGGAG Cheo DL, et al. (1993): S1

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAGGCTGAGTGAAAAACTCAGCTTTTTTGTATTTTGC
     >>>>>>>     <<<<<<<
1764991..1765009
31..49
-12.8
 recA

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai